Pyrganoid
Brain Organoid Growth ModellingI designed and implemented the Pyrganoid python module to understand population heterogeneity in brain organoids by simulating multi type branching processes. Pyrganoid can numerically approximate differential equation for global growth, simulate a corresponding branching process exactly via the Gillespie algorithm or approximately with a time discretisation.
Used in
Pflug et al 2024
and
Lindenhofer et al 2024
.