Projects
PhantomBuster
Lineage Tracing PipelineMenqu
High-Throughput qPCR analysis toolCalsiprovis
Calcium Signal Propagation Speed AnalysisPyrganoid
Brain Organoid Growth ModellingExperience
Freelancing Bioinformatician
Toronto, Canada
2025-present
CRISPR-LICHT analysis for the Nicolis Lab
2025
Identification of proliferation effects of gene knockouts
PhD Student
Vienna, AustriaCIBIV, University of Vienna
2020-2024
Data Entry, IT Administration and Software Development
Vienna, AustriaAuer Signal GmbH
2015-2017
Academic Publications
PhantomBuster – A tool for removing phantoms in sequencing-based lineage tracing experiments
, Pflug FG, Schroeder B, Lindenhofer D, Esk C.
in preperation
Cerebral organoids display dynamic clonal growth and tunable tissue replenishment
, , , , Avalos CB, Naas J, Pflug FG, van de Ven EGP, Reumann D, Baffet AD, von Haeseler A, Knoblich JA.
Nature Cell Biology.
2024-05-07.
DOI 10.1038/s41556-024-01412-z
Neutral competition explains the clonal composition of neural organoids
, , Esk C, Lindenhofer D, Knoblich JA, von Haeseler A.
PLoS Comput Biol.
2024-04-22.
DOI 10.1371/journal.pcbi.1012054
Multi-chamber cardioids unravel human heart development and cardiac defects
, , Ilmer T, , Caballero AT, Novatchkova M, Netzer MA, Ginistrelli LC, Juncosa EM, Bhattacharya T, Mujadzic A, Pimpale L, Jahnel SM, Cirigliano M, Reumann D, Tavernini K, Papai N, Hering S, Hofbauer P, Mendjan S.
Cell.
2023-12-07.
DOI 10.1016/j.cell.2023.10.030
A human tissue screen identifies a regulator of ER secretion as a brain-size determinant
, , , Wester RA, Pflug F, Schroeder B, Bagley JA, Elling U, Zuber J, von Haeseler A, Knoblich JA.
Science.
2020-11-20.
DOI 10.1126/science.abb5390